CIS Accountants for Contractors & Subcontractors

Specialist CIS accounting support for construction businesses and trades

If you work in construction, keeping on top of the Construction Industry Scheme can quickly become another job in itself.

Yorkshire Accountancy provides CIS accounting services for contractors and subcontractors across Yorkshire and throughout the UK. Whether you need help registering for CIS, verifying subcontractors, submitting monthly CIS returns, reconciling deductions or completing your Self Assessment tax return, we can take care of the accounting and tax side for you.

We work with builders, electricians, plumbers, joiners, roofers, plasterers, scaffolders and other construction trades, from self-employed subcontractors through to limited companies managing teams of subbies.


Looking for a CIS accountant? Speak to Yorkshire Accountancy about taking the paperwork off your hands.

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What Our CIS Accountants Can Help With

Our CIS accountants can help with:

  • CIS registration
  • Subcontractor verification
  • Monthly CIS returns
  • CIS deduction statements
  • CIS tax deduction reconciliation
  • Self Assessment tax returns
  • CIS tax repayment claims
  • Gross payment status
  • Bookkeeping and annual accounts
  • VAT and the Domestic Reverse Charge
  • Making Tax Digital
  • Payroll and employment status queries

CIS Accountants for Contractors

If you pay subcontractors to carry out construction work, you may have responsibilities as a contractor under the Construction Industry Scheme.

Getting CIS wrong can result in incorrect deductions, late returns and potentially costly penalties. Our CIS accountants for contractors can help manage the process from start to finish.

We can assist with:

  • Registering your business as a CIS contractor
  • Verifying new subcontractors with HMRC
  • Applying the correct CIS deduction rate
  • Preparing and submitting monthly CIS returns
  • Filing nil CIS returns where required
  • Issuing subcontractor payment and deduction statements
  • Keeping appropriate CIS records
  • Reconciling CIS deductions with your accounting records
  • Advising on subcontractor employment status
  • VAT Domestic Reverse Charge queries
  • Payroll and PAYE where workers are employees rather than subcontractors

CIS deduction rates

When you verify a subcontractor, HMRC will tell you which deduction rate should apply.

The main CIS rates are:

  • 20% for registered subcontractors paid under deduction
  • 30% where a subcontractor is not registered or cannot be correctly verified
  • 0% for subcontractors approved for gross payment status

You then need to report the relevant payments and deductions to HMRC and pay over the amounts deducted.

We can manage this process for you so that your CIS records, accounting records and HMRC submissions stay aligned.

Monthly CIS Returns

CIS contractors must report payments made to subcontractors to HMRC through their monthly CIS return.

The CIS tax month runs from the 6th of one month to the 5th of the next, with the return normally due by the 19th following the end of the tax month.

Your return can include details such as:

  • Which subcontractors you have paid
  • The amount paid
  • Any materials included
  • CIS deductions made
  • Confirmation of the subcontractor’s employment status

If you have not paid any subcontractors during the period, you will generally need to submit a nil return or notify HMRC that you have temporarily stopped using subcontractors.

Yorkshire Accountancy can prepare and submit your CIS returns as part of an ongoing accounting service, helping you avoid missed deadlines and keeping your records up to date.

CIS Accountants for Subcontractors

If you work for a contractor under CIS, tax may be deducted from your payments before the money reaches you.

For a registered subcontractor, this will normally be at 20%. If you are not correctly registered or cannot be verified, deductions can be made at 30%.

Importantly, CIS deductions are not necessarily your final tax bill. They are advance payments towards your tax and National Insurance position.

Our sole trader accountants can help you make sure the deductions you have suffered are properly recorded and taken into account.

We can help with:

  • Registering you as a CIS subcontractor
  • Checking CIS deduction statements
  • Reconciling deductions against payments received
  • Preparing your annual accounts
  • Completing your Self Assessment tax return
  • Identifying allowable business expenses
  • Calculating whether additional tax is due
  • Claiming any repayment you are entitled to
  • Advising on gross payment status
  • Making Tax Digital for Income Tax
  • Moving from sole trader to limited company where appropriate

Whether you are a self-employed bricklayer working for one main contractor or operate a limited company working across multiple sites, we can tailor the service around the way you actually work.

CIS Tax Refunds and Allowable Expenses

It is common to hear CIS deductions described as a “CIS tax”, but they are actually payments towards your eventual tax and National Insurance liability.

That distinction matters.

A contractor may have deducted 20% from your qualifying payments throughout the year, but your final tax position depends on your actual business profits and individual circumstances.

This means some subcontractors may be entitled to a tax repayment, while others could still have tax to pay.

We can reconcile the deductions shown on your CIS statements, prepare your accounts and make sure legitimate business expenses are included before calculating your final tax position.

Depending on your circumstances, allowable expenses could include costs relating to:

  • Tools and equipment
  • Business mileage or qualifying vehicle costs
  • Materials purchased for jobs
  • Protective clothing and safety equipment
  • Business insurance
  • Accountancy fees
  • Mobile phone costs relating to the business
  • Software and bookkeeping systems
  • Professional subscriptions
  • Certain training costs
  • Other expenses incurred wholly and exclusively for your trade

The rules depend on the individual expense and your circumstances, so we recommend checking rather than assuming a cost is automatically allowable.

Our aim is to make sure you claim what you are legitimately entitled to without taking unnecessary risks with HMRC.

CIS Gross Payment Status

Subcontractors with gross payment status can be paid by contractors without CIS deductions being taken from their payments.

Rather than having tax deducted at source, you are responsible for dealing with your own tax liabilities.

Gross payment status can improve cash flow for established construction businesses, particularly where significant amounts are otherwise being deducted each month.

However, you need to meet HMRC’s qualifying conditions and continue meeting the relevant requirements to retain the status.

Yorkshire Accountancy can help you assess whether gross payment status is appropriate, assist with the application process and help keep your tax affairs in order once it is granted.

VAT and the Construction Industry

CIS and VAT are separate tax regimes, but construction businesses often need to deal with both at the same time.

One of the main areas to consider is the Domestic Reverse Charge for construction services.

Where the reverse charge applies, the customer rather than the supplier accounts for the VAT. This can affect your invoices, VAT returns and cash flow.

Our construction and CIS accountants can help with:

  • Deciding when the Domestic Reverse Charge applies
  • Checking your invoices contain the correct information
  • Accounting for reverse charge VAT correctly
  • VAT registration
  • Preparing VAT returns
  • Reviewing VAT treatment on construction work
  • Considering zero-rated construction work where relevant
  • Maintaining MTD-compliant VAT records

If you are unsure whether CIS, the VAT Domestic Reverse Charge or both apply to a particular job, speak to our Vat Accountants before submitting the return.

Making Tax Digital for CIS Subcontractors

If you are a self-employed CIS subcontractor, Making Tax Digital for Income Tax may now affect how you keep your accounting records and report information to HMRC.

From 6 April 2026, qualifying sole traders with total annual qualifying income from self-employment and property of more than £50,000 are required to use Making Tax Digital for Income Tax, unless an exemption applies.

The threshold is scheduled to reduce to:

  • More than £30,000 from 6 April 2027
  • More than £20,000 from 6 April 2028

Those within MTD for Income Tax need compatible software to maintain digital records and meet the relevant HMRC reporting requirements.

Our Making Tax Digital Services can help you:

  • Check whether MTD applies to you
  • Choose appropriate accounting software
  • Set up your bookkeeping correctly
  • Maintain digital records
  • Understand your quarterly requirements
  • Keep your CIS deductions reconciled
  • Complete your year-end tax reporting

You do not need to buy complicated accounting software simply because you work under CIS. We can recommend a system suited to the size and complexity of your business.

Bookkeeping for CIS Contractors and Subcontractors

Good CIS accounting starts with good bookkeeping.

Construction businesses can have complicated records, particularly where payments include labour and materials, multiple contractors are involved or dozens of subcontractors are being paid each month.

We can provide bookkeeping services covering:

  • Sales and purchase invoices
  • Bank reconciliation
  • CIS deductions
  • Subcontractor payments
  • Expense records
  • VAT
  • Digital receipt capture
  • Accounting software
  • Management information
  • Year-end accounts preparation

Having accurate records throughout the year also means there is less work to untangle when your accounts or tax return become due.

CIS Accountants for Limited Companies

CIS does not only apply to self-employed sole traders.

Limited companies can operate as contractors, subcontractors or both.

For example, your company may have CIS deducted from payments it receives while also making deductions from subcontractors it pays.

The accounting treatment and process for reclaiming deductions can differ from those of a self-employed individual.

Our Limited Company Accountants can manage your wider company accounting alongside CIS, including:

  • Annual company accounts
  • Corporation Tax returns
  • Payroll
  • CIS suffered and deducted
  • VAT
  • Bookkeeping
  • Director remuneration
  • Companies House requirements
  • HMRC submissions

Keeping everything with one accountant can make it much easier to reconcile CIS with payroll, VAT, bookkeeping and your company’s year-end accounts.

Accountants for Construction Trades

We support a wide range of businesses working within the construction industry.

This includes:

If you operate within one of these trades, we can provide broader accounting and tax support as well as managing your CIS obligations.

Why Choose Yorkshire Accountancy as Your CIS Accountants?

Construction businesses need an accountant who understands how CIS works alongside the rest of their accounts.

We provide practical support rather than simply contacting you once a year when a tax return is due.

With Yorkshire Accountancy, you can get:

  • Support for both CIS contractors and subcontractors
  • Fixed fees agreed in advance
  • Help with CIS, accounts, tax, VAT and bookkeeping
  • Support choosing and using accounting software
  • Practical advice without unnecessary jargon
  • Help keeping on top of regular HMRC deadlines
  • Support from an established accountancy firm
  • Remote accountancy support wherever you are in the UK

We are based in East Yorkshire and work with businesses throughout Hull, Yorkshire and nationally.

Our aim is simple: keep the accounting side organised so you can concentrate on running your business and getting jobs completed.

Speak to Our CIS Accountants

Whether you’re a contractor managing a team of subcontractors or a self-employed tradesperson having CIS deducted from your payments, we can help you keep everything organised.

Yorkshire Accountancy can deal with your CIS returns, tax deductions, accounts, Self Assessment, VAT, bookkeeping and Making Tax Digital, giving you one point of contact for the accounting side of your business.

If you’re looking for reliable CIS accountants for contractors or subcontractors, get in touch with our team for an initial conversation about what you need.

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CIS Accountant FAQs

There is no general requirement to employ an accountant simply because you operate under CIS. However, contractors are responsible for areas such as subcontractor verification, deductions, monthly returns and payment statements, while subcontractors need to ensure deductions are correctly reflected in their tax affairs. A CIS accountant can manage these obligations and help reduce the risk of errors or missed deadlines.
An accountant can help you with the CIS registration process and make sure your business is registered in the appropriate capacity as a contractor, subcontractor or both.
A registered and verified subcontractor is normally subject to deductions at 20%. Unregistered or unverified subcontractors may be subject to the 30% rate. Subcontractors approved for gross payment status can be paid without CIS deductions.
CIS deductions are treated as payments towards your tax liabilities rather than automatically being a final tax charge. Whether you receive a repayment depends on your business profits, expenses, other income, tax position and the amount already deducted. We can reconcile your CIS deductions and calculate your actual position.
The CIS tax month runs from the 6th to the 5th, and monthly contractor returns are normally due to HMRC by the 19th of the following month.
Contractors should still deal with the CIS reporting requirement where no subcontractors have been paid. This will usually mean filing a nil return or notifying HMRC that you have temporarily stopped using subcontractors.
Gross payment status allows an eligible subcontractor to receive payments without CIS deductions being taken by the contractor. The subcontractor is then responsible for paying the appropriate tax themselves.
It can. A self-employed CIS subcontractor may fall within Making Tax Digital for Income Tax if their qualifying income exceeds the relevant threshold and they are not exempt. The first mandatory phase began on 6 April 2026 for those with qualifying income over £50,000.